Biopunk – Michael Pyne

I like biology. I like it a lot. So when people ask me what field I am in, I usually respond by stating, “Biology!” But what does this tell them? Is this response too vague? Of course it is! And these days it is as ambiguous as ever before. What I have done is merely scratched the surface. An analogy would be showing someone a globe when they ask for directions to your house. The point is this: biology is expanding at an unprecedented rate and is blurring the lines that used to separate distinct fields. This has led to the birth and development of numerous diverse fields still in their infancy, including biotechnology and genetic engineering, biomaterials, bioinformatics, genomics and proteomics (and other omics), systems biology, synthetic biology, metabolic engineering and so on. It seems that nowadays anyone can bring a novel field into being simply by tacking the bio prefix onto any preexisting field. We’ve yet to hear about biovisual and bioperforming arts, biophilosophy (perhaps bioethics?), bioreligion (perhaps evolution?) or biolanguages but I suspect they are not far away. This bio trend likely has origins in the marriage of biology with both chemistry and physics, which occurred sometime in the 19th century. As a result, many of us are quite familiar with the disciplines of biochemistry and biophysics. Biotechnology (and genetic engineering), on the other hand, has thus far become known, at least to the general public, as a sinister sci-fi field (“Franken”-field) that should probably be left untapped until we can better understand the consequences of tinkering with nature.

To me, biology has always been lagging behind chemistry and physics. We have a very good understanding of atoms, molecules and forces, yet we have only begun to decipher the layers of complexity that make up even the simplest single-celled living organism, let alone the human brain and cancer, for example. Even viruses, essentially genetic material wrapped in protein (they’re not even living!), are able to outcompete our lackluster attempts at prevention, vaccination and treatment (think of the common cold, HIV, HPV, hepatitis, SARS, Ebola, avian flu and H1N1). The emerging line of thinking seems to be that, as humans we simply are not capable of fully understanding the intricacies and complexities that make up a living organism. We do not possess the brain power to compute or design the workings of a living organism. Enter the computer and Digital Age.

With the advent of petrochemistry and the global chemical industry, the 20th century is largely regarded as the Chemical Century. Now in the 2000s, however, it is time for chemistry to pass on the reigns, albeit extremely gradually, to biology. We are currently at the dawn of a worldwide biorevolution, one well-documented in the unsettlingly-titled 2011 book “Biopunk: DIY Scientists Hack the Software of Life.” The book’s author, Marcus Wohlsen, equates the current desire and need for open sourcing of biological information to the open source software revolution of the 1970s. Wohlsen envisages a world in the near future where eager DIY bionerds have access to all the necessary equipment, know-how and genetic information (i.e. DNA and gene sequences) to perform exciting genetic engineering experiments in the comfort of their own garages. In essence, biotech and genetic engineering experiments will no longer be performed solely in well-funded academic institutions and multibillion dollar biotech companies. Just as companies such as Apple, RIM, Google and Facebook emerged from basements, dorm rooms and coffee shops in the 70s, 80s and 90s, Wohlsen believes many of the future groundbreaking biological discoveries will grow out of kitchens, garages and abandoned buildings turned DIY laboratories.

Although I may have lost track, my rambling does have implications to teaching biology and all of its distinct fields, subfields and yet-to-be fields. Although biology is evolving at an unprecedented rate and is amalgamating with numerous other areas of science and engineering, it is almost impossible for our curricula to keep pace. With my undergraduate training in Biochemistry and Biotechnology only three years behind me, I feel that my research field is demanding I know more about coding, mathematics and bioinformatics than my undergraduate degree allowed. Since we now have a better understanding of metabolic reactions and fundamental cellular processes, biology is on the move toward life on a larger scale – I mentioned the rise of systems biology, the interdisciplinary study of complex biological interactions and their implications in biological systems, earlier in this post. However, many university biology programs are lacking sufficient training in omics, bioinformatics and synthetic and systems biology – the very fields that are most likely to define and shape the 21st century. But with the pace at which modern biology is changing, can we really blame our curricula for being a few steps behind? Perhaps a wake-up call will be in store in the coming years when undergraduates begin showing up for class with their own personal genomes, all 3.4 billion nucleotide “letters” that make up a person’s unique 25,000-30,000 genes, arranged nicely on an App on their iPhone. Or perhaps it is already happening around the world with a small army of resourceful Biopunks preaching their DIY gospel and putting on demonstrations by isolating the genomic DNA from strawberries using nothing more than water, rubbing alcohol, table salt, shampoo and a coffee filter – all items readily available in any common household. All I can say is that it’s a great time to be a biology student!

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The Centre for Teaching Excellence welcomes contributions to its blog. If you are a faculty member, staff member, or student at the University of Waterloo (or beyond!) and would like contribute a posting about some aspect of teaching or learning, please contact Mark Morton or Trevor Holmes.

Inspiring Innovation

Innovation is all around us at Waterloo. The Waterloo Institute for Social Innovation and Resilience (WISIR) is poised to take a leadership role in generating new inter-disciplinary knowledge about social innovations and the social innovation process in Canada. The new Masters of Digital Experience Innovation (MDEI) will be offered this fall on our new Stratford Campus, and students who are part of VeloCity are living in an atmosphere that helps them develop their own innovative entrepreneurial projects and nurtures their creativity.  I was thinking about this recently after reading an article in my new favourite web publication by Fast Company, which focuses on innovation in technology, ethonomics (ethical economics), leadership and design.  The article “You Can’t Innovate If You Ignore Your Real Problems” , made me think about how to foster innovation in our own work at the CTE (not that we have problems!) and how we all need to examine our attitudes, culture and processes if we want to be truly innovative. These can be hard things to change in any organization large or small.

Tomes have been written on the theory of creating conditions that help foster innovation and creativity in different fields.  My own brother is an academic in the field of public science and technology policy at SFU and thinks deeply about how public sector policies can allow for innovation in various environments.  Innovation is a “large tent”, he says, and we all want to gather under it. How can we create the conditions that will allow us to be more innovative in our teaching and in our support of teaching? What can we learn from the public and private business sector about this? Here are a few ideas that are prevalent in design, science and technology industries which should be applicable to fostering innovation in teaching and learning.

All members of an organization or teaching team should be able to contribute their innovative ideas irrespective of their role, and should be encouraged to spend time thinking about how to be more innovative. We need to set aside “thinking time”, book it into our schedules and then plan to share our ideas.  How these ideas are shared can have an impact on what comes forward – using technology properly can enable everyone in an organization or team  to have their voice heard, or putting people in a room to just talk about new ideas and nothing else can energize a group.  Once the ideas are out there some should be implemented, even if they may not all be successful. Taking risks is a necessary part of trying something new, so we have to be open to failure and run with ideas and plans that may be less than perfect.  Not every new idea will be successful, (which makes me wonder about the balance of “excellence” and “innovation “and how we can maintain both comfortably).  Innovation doesn’t always pay off in the short term; for businesses making money can’t be the focus initially, although it may pay off eventually. For those in the teaching and learning fields something innovative may not be welcomed by our students initially but may be beneficial to their learning in the long run.

Also of importance, being innovative keeps us engaged and excited about our jobs – although with the fall term only a few weeks away, the anticipation and possibilities of a new academic year are in the air and it’s not hard to feel excited about that.

The following websites helped me bring these ideas together:

http://gigaom.com/2008/04/17/pixars-brad-bird-on-fostering-innovation/

http://www.inc.com/guides/2010/04/fostering-innovation-in-companies.html

http://americanlibrariesmagazine.org/columns/practice/nurturing-innovation

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The Centre for Teaching Excellence welcomes contributions to its blog. If you are a faculty member, staff member, or student at the University of Waterloo (or beyond!) and would like contribute a posting about some aspect of teaching or learning, please contact Mark Morton or Trevor Holmes.

Shaping society by teaching

Image Credit: NASA/NOAA GOES Project

Last week I attended the American Association of Physics Teachers (AAPT) summer meeting in Omaha, Nebraska.  It was several days full of educational research, best practices and new ideas for teaching physics – which I could go on and on about (but don’t worry – I won’t).  I do want to share something that stuck with me from one of the plenary talks.  Edward Prather, who teaches very large (1500+ students) interactive astronomy classes, was talking about how he can affect students’ lives through his astronomy course.

At the beginning of his talk he asked the audience how satisfied we are with society.  The choices (which we responded to with flash cards) were:

A. completely happy

B. fairly satisfied, but some things could be better

C. very unhappy – things need to change

D. suicide watch

Star-Forming Region LH 95 in the Large Magellanic Cloud
Source: Hubblesite.org

I imagine you can guess how the audience responded – I don’t think there was a single A in the room.  He reminded us that as educators, we have the opportunity to profoundly effect the lives of our students.  Edward is in the lucky position to teach Astronomy, a topic that almost everyone is interested in (as a result, he gets over 1000 students in one course!)  There is something about seeing pictures of the universe that really make you examine the life you lead.  But regardless of the field you teach in – you have the ability to shape the lives of hundreds of students each year! Teaching them to think for themselves, examine the facts, and push boundaries will results in well-rounded, intelligent citizens – the kind of people we want running our cities, financial institutions, hospitals and raising the next generation.

I can’t do his inspiring talk justice, but I left feeling empowered and it reminded me of why I wanted to teach in the first place.  And I hope this post prompts you to think about what, beyond the curriculum, you are teaching your students.

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The Centre for Teaching Excellence welcomes contributions to its blog. If you are a faculty member, staff member, or student at the University of Waterloo (or beyond!) and would like contribute a posting about some aspect of teaching or learning, please contact Mark Morton or Trevor Holmes.